[Chimera-users] Tetrahedral Sulphide bonds
meng at cgl.ucsf.edu
Fri May 26 12:54:20 PDT 2017
That is not really a Chimera question… maybe you can try searching some structure databases:
RCSB PDB search
There is also the Cambridge Structural Database for small molecules.
> On May 26, 2017, at 12:44 PM, Yogavel Manickam <myogavel at icgeb.res.in> wrote:
> Dear Elaine,
> Recently I have determined this sulfide bond motif containing structure and I would like to know that any exiting PDB having this motif.
> ----- Original Message -----
> From: "Elaine Meng" <meng at cgl.ucsf.edu>
> To: "Yogavel Manickam" <myogavel at icgeb.res.in>
> Cc: "chimera-users at cgl.ucsf.edu BB" <chimera-users at cgl.ucsf.edu>
> Sent: Friday, May 26, 2017 11:58:56 PM
> Subject: Re: [Chimera-users] Tetrahedral Sulphide bonds
> Dear Yoga,
> What is the question? Do you already have this structure? What are you trying to do with Chimera?
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>> On May 26, 2017, at 10:21 AM, Yogavel Manickam <myogavel at icgeb.res.in> wrote:
>> Dear all,
>> Is there any example for tetrahedral sulphide bonds.
>> CB-S1B (0.7)
>> |1.8 A
>> 2A . 2A
>> . 2A
>> S1 containing Cys adopt alternate conformation (S1A and S1B) with occupies of 0.7 and 0.3.
>> S1A position occupied by Zn ion with ~0.7.
>> Any input will be appreciated.
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