[Chimera-users] chimera download

bushra TAJ bushraistaj at gmail.com
Tue May 23 11:34:08 PDT 2017


Thank You
You have been very helpful
Rgards

On Tue, May 23, 2017 at 9:31 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Yes, many people use Chimera to analyse results from AutoDock.  You would
> use the “ViewDock” tool (in menu under Tools… Surface/Binding Analysis).
> AutoDock pdbqt file is one of the input formats.
>
> ViewDock tool:
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/
> framevd.html>
>
> See also the ViewDock tutorial:
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html>
>
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
> > On May 22, 2017, at 10:30 PM, bushra TAJ <bushraistaj at gmail.com> wrote:
> >
> > Thank you Sir
> > Actually I intend to work on AutoDock and since it need a pdb file
> format I wanted Chimera (but since you are saying I need pdb to load ligand
> file in Chimera I will probably need some other tool.
> > Can I still get the chance to analyse my Docked results on Chimera
> software.
> > Thanks for your guidance
> > Regards
>
>
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