[Chimera-users] chimera download

Elaine Meng meng at cgl.ucsf.edu
Tue May 23 09:31:26 PDT 2017


Yes, many people use Chimera to analyse results from AutoDock.  You would use the “ViewDock” tool (in menu under Tools… Surface/Binding Analysis).  AutoDock pdbqt file is one of the input formats.

ViewDock tool:
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/framevd.html>

See also the ViewDock tutorial:
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On May 22, 2017, at 10:30 PM, bushra TAJ <bushraistaj at gmail.com> wrote:
> 
> Thank you Sir
> Actually I intend to work on AutoDock and since it need a pdb file format I wanted Chimera (but since you are saying I need pdb to load ligand file in Chimera I will probably need some other tool. 
> Can I still get the chance to analyse my Docked results on Chimera software.
> Thanks for your guidance
> Regards




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