[Chimera-users] Using vop to cover a whole molecule

Tom Goddard goddard at sonic.net
Fri May 19 16:48:29 PDT 2017


Hi Pradeep,

  Maybe your xray density map is not a full asymmetric unit so the whole unit cell cannot be reconstructed from it.  Or maybe the symmetry operators aren’t in the map file so it is only using unit cell translations.  Can’t be sure what the problem is without access to the specific data files.

	Tom

> On May 19, 2017, at 11:37 AM, Pradeep Pallan wrote:
> 
> Hi All,
> 
> I would like to know how to extend an e-density map
> in y or z direction. Here is my case:
> 
> The DNA structure that was refined in shelx. 
> Model #0 is DNA and the e-density map is model #1.
> When I used vop cover #1 atom #0, the electron density
> covers the molecule along two axes, and for the third axis
> it covers partly. How to extend the e-density map in a particular 
> axis? 
> 
> Thank you!
> -- 
> 
> -------------------------------------------------------------------
> Pradeep Pallan
> _______________________________________________
> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users




More information about the Chimera-users mailing list