[Chimera-users] model recordings

Elaine Meng meng at cgl.ucsf.edu
Wed Jun 7 12:37:49 PDT 2017


Hi Paul,
>From the manual page for Molecular Dynamics Simulation:

"Select model: The model of interest should be chosen by clicking to highlight its name in the list of models. All of the atoms for simulation should be included in this model; any other models will be ignored.”

You can see that page by clicking the Help button on the tool dialog, or view the copy on our website:
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/md/md.html>

Elaine

> On Jun 7, 2017, at 11:23 AM, pbuscemi <pbuscemi at q.com> wrote:
> 
> Thanks Elaine,
> 
> Your assumptions were correct..and I apologize for the poor description.
> 
>  If I were to open the two files as two models - surface and water - and select only water to run the simulation ( only water is active ) would the water  know the surface was present ?
> 
> Paul




More information about the Chimera-users mailing list