[Chimera-users] Map conservation of my sequence compared to sequence alignment

mfellner at msu.edu mfellner at msu.edu
Thu Jan 5 09:37:53 PST 2017


Good day

I like the mapping sequence conservation tool in chimera, however I ran into a problem that I could not overcome with anything I found online.

I have the consensus mapped onto my protein but that is not what I want. I want to show how the residues of my protein are conserved. For example at a particular residue the consensus is a C but in my structure its a W. at the moment the W is colored to be highly conserved based on the consenus of the C. The W is maybe 15% conserved, how can I map the conservation of my sequence compared to all the other sequences.

I hope I explained what my issue is
Thank you for this great tool
Matthias Fellner
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