[Chimera-users] Upgrade to Sierra
goddard at sonic.net
Mon Feb 6 10:48:40 PST 2017
As I recall an Apple graphics driver bug caused all atoms to be black a few years ago and we worked around that bug in newer Chimera versions.
> On Feb 5, 2017, at 10:11 AM, F.Xavier Gomis-Rüth <fxgr at ibmb.csic.es> wrote:
> Dear Elaine,
> thanks a lot for your promptest response!
> I followed your advice and managed to get the problem solved by installing the last overnight upgrade.
> Best regards,
> On 5/2/17 18:26, Elaine Meng wrote:
>>> -------- Forwarded Message --------
>>> Subject: Upgrade to Sierra
>>> Date: Sun, 5 Feb 2017 17:58:53 +0100
>>> From: F.Xavier Gomis-Rüth <fxgr at ibmb.csic.es> <mailto:fxgr at ibmb.csic.es>
>>> Dear Elaine,
>>> I recently had to upgrade to Sierra from Mountain Lion and now I find that ions are displayed as black spheres only
>>> in Chimera v. 1.9. Any ideas on what I should change?
>>> Kind regards,
>>> On Feb 5, 2017, at 9:11 AM, F.Xavier Gomis-Rüth <fxgr at ibmb.csic.es> <mailto:fxgr at ibmb.csic.es> wrote:
>>> Elaine, it's not only the ions, its all the atoms and bonds.
>>> Ribbon appear fine though....
>> Dear Xavier,
>> I’m not an expert on this kind of thing, so I’m forwarding to the chimera-users list.
>> (Sending to the list is always recommended… I will still answer it if I can, just as fast!)
>> Although I don’t know if it’s related, maybe you should get a newer version of Chimera. Using Chimera versions 1.11.2 and 1.12 daily build on both a laptop and a desktop running Sierra, I do not have this problem.
>> Elaine C. Meng, Ph.D.
>> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
>> Department of Pharmaceutical Chemistry
>> University of California, San Francisco
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