[Chimera-users] substituting atoms

simon chapman rowanlodge19 at gmail.com
Wed Dec 27 13:49:59 PST 2017

Hello...for my Master's dissertation, I need to substitute a sulphur atom
for an oxygen in a Molecular Dynamics simulation. The run works fine with
my target molecule 1KF1.pdb uploaded into Chimera, but the substituted
version sends quite a few error messages and won't run. It doesn't appear
to recognise the novel S atom.

Any help would be much appreciated...I've been stuck on this for nearly a

Best wishes   Simon
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