[Chimera-users] How to install package in chimera python?

Eric Pettersen pett at cgl.ucsf.edu
Thu Apr 13 11:03:38 PDT 2017


It seems that you have the IDLE shell set to autostart, which unsurprisingly fails in nogui mode.  It’s harmless — you can ignore it.

—Eric

> On Apr 12, 2017, at 2:30 PM, hy liao <hl_random at yahoo.com> wrote:
> 
> Thank you, Eric! but I get this error, will it cause later malfunctions?
> 
> > chimera/bin/chimera --nogui --script "chimera/bin/pip install scipy"
> Starting extension 'IDLE' failed 
> (and then blah...)
> 
> Thanks again,
> SL
> 
> 
> 
> 
> On Tuesday, April 11, 2017 1:28 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> 
> 
> You type that to the Unix shell, the same way you started Chimera.  So:
> 
> 	<whatever command you use to start Chimera>  --nogui --script get-pip.py
> 
> —Eric
> 
> 	Eric Pettersen
> 	UCSF Computer Graphics Lab
> 
> 
>> On Apr 10, 2017, at 6:23 PM, hy liao <hl_random at yahoo.com <mailto:hl_random at yahoo.com>> wrote:
>> 
>> Hi, this was posted here, but where exactly do I invoke the said chimera command? I open chimera with IDLE; a python shell opens with the following
>> 
>> Python 2.7.10 (default, May  4 2016, 01:09:35) 
>> [GCC 4.6.2] on linux2
>> Type "copyright", "credits" or "license()" for more information.
>> ==== No Subprocess ====
>> >>> 
>> >>> import chimera
>> >>>
>> 
>> I tried what the posting said, but got an error
>> >>> chimera --nogui --script get-pip.py
>> Traceback (most recent call last):
>>   File "<pyshell#3>", line 1, in <module>
>>    chimera --nogui --script get-pip.py
>> NameError: name 'nogui' is not defined
>> 
>> Thanks,
>> SL
>> 
>> 
>> 
>> 
>> [Chimera-users] How to install package in chimera python? <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-November/012851.html>
>> 
>> 
>> [Chimera-users] How to install package in chimera python?
>>  <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-November/012851.html>
>> 
>> 
>> 
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> 
> 
> 
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