[Chimera-users] building modeller loops refinement

Elaine Meng meng at cgl.ucsf.edu
Thu Apr 6 08:51:44 PDT 2017


Dear Armin,
You can either

(1) just write a single PDB file that has two models in it, for example with menu: File… Save PDB, and in the resulting dialog make sure both models are highlighted in the “Save models” area, and then at the bottom specify to "Save multiple models in a single file.”
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#pdb>
- or -
(2) combine the two models into a single model before saving to file.  Combining can be done with command “combine” or the “copy/combine” function in the right side of the Model Panel (open from Favorites menu).
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/combine.html>  
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/modelpanel.html>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Apr 6, 2017, at 2:54 AM, ARMIN HODAEI <ahodaei15 at ku.edu.tr> wrote:
> 
> Dear Elaine,
>    Thank you for your email. So I build missing residues for my both chains separately, is there a way to combine these two chains after that process?? I mean, I have now two chains which they are both the outputs of Modeller, how to create a single PDB out of two processed PDB.
> Cheers, 
> 




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