[Chimera-users] : Channel and normal mode calculations

Elaine Meng meng at cgl.ucsf.edu
Mon Nov 28 11:40:15 PST 2016


Hi Mohamed,
For future reference, Chimera questions should be sent to chimera-users at cgl.ucsf.edu (CC’d here).

Those normal mode web servers I mentioned in an earlier message are not connected to Chimera.  You would have to just go to the links I gave and use them separately.
<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-November/012909.html>

The Chimera daily builds (not the production releases) include an experimental feature developed by an outside group, menu:  Tools… Structure Analysis… Calculate Normal Modes.  However, I don’t know how to use it and it does not have any Help, so I’d probably use some web server outside of Chimera instead.  I only mentioned a few web servers, you could probably find many more with a web serach.

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

> 
> On 11/28/16, 8:43 AM, "Mohamed Noor" <mohamed.noor at ul.ie> wrote:
> 
>> Hello.
>> 
>> I am wondering whether Chimera can do these calculations natively? Or do
>> I need some plug ins?
>> 
>> Thanks.
>> Mohamed




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