[Chimera-users] Highlighting the H bonds during simulation
a1468984 at unet.univie.ac.at
Tue May 31 02:21:53 PDT 2016
How could I highlight the formation and breakdown of Hbonds with the
ligand to that of residues during the md simulation. I tried using the
script (per-frame commands)
hb line 2 color yellow reveal true
Using this command, highlights all Hbonds in the system during the
simulation, but I would like to see only Hbond interactions with ligand
to that of nearby residues. How could I do this? what would be the
appropriate per-frame script?
Looking forward for the guidance.
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