[Chimera-users] Highlighting the H bonds during simulation

Natesh Singh a1468984 at unet.univie.ac.at
Tue May 31 02:21:53 PDT 2016


Dear Sir,

How could I highlight the formation and breakdown of Hbonds with the 
ligand to that of residues during the md simulation. I tried using the 
script (per-frame commands)

chain @ca
~disp solvent
hb line 2 color yellow reveal true

Using this command, highlights all Hbonds in the system during the 
simulation, but I would like to see only Hbond interactions with ligand 
to that of nearby residues. How could I do this? what would be the 
appropriate per-frame script?

Looking forward for the guidance.

Best regards,
Natesh
Uni.Wien


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