[Chimera-users] Identify hinges and rigid groups using Morph Conformations?

Conrad Huang conrad at cgl.ucsf.edu
Mon Jan 4 12:14:32 PST 2016


Unfortunately, this is not a simple task.  There are actually several 
layers of heuristics beyond the referenced procedures, mainly to handle 
small segments and chain identifiers, so the results may not be as clean 
as one would expect.  Also, we would then have to come up with some sort 
of naming/attribute scheme so that different parts can be referenced. 
This may fall more in the ChimeraX realm at this point.  Sorry.

Conrad

On 12/18/2015 1:06 PM, Oliver Clarke wrote:
> Hi,
>
> I gather from reading the documentation for “Morph Conformations”
> (https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/morph/morph.html)
> that Chimera identifies hinge regions and rigid groups as part of the
> procedure (as per
> http://nar.oxfordjournals.org/content/28/8/1665.long).
>
> Would it be possible to expose these to the user (or maybe this is
> already possible?), such that one can color/label the hinges and
> rigid entities as desired? This would be helpful for visual
> simplification of complex conformational changes.
>
> Cheers, Oliver. _______________________________________________
> Chimera-users mailing list Chimera-users at cgl.ucsf.edu
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>



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