[Chimera-users] color zone on command line

Elaine Meng meng at cgl.ucsf.edu
Sat Dec 24 08:38:41 PST 2016


Hi Kyle,
Now there are Chimera commands to color zone and split by zone, so you could use them directly or via the python approach to run Chimera commands.
http://www.rbvi.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html

For color zone, see “scolor zone”
http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html

Splitting a map by the resulting color zones is a little harder to find because it’s not a regular command but a keyboard shortcut “sm” … however, it can be run with the regular command “ac sm”
http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/ac.html
http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/accelerators/alist.html

I hope this helps,
 Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Dec 22, 2016, at 1:57 PM, Kyle Morris <kylelmorris at berkeley.edu> wrote:

> Hi Chimera dev,
> Following on from this post back from 2009:
> 
> http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-January/003514.html
> 
> How would one also split map in this python script?
> Thanks!
> Kyle
> 




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