[Chimera-users] Select Non-conserved residue

Elaine Meng meng at cgl.ucsf.edu
Tue Aug 23 09:44:00 PDT 2016

Hi Markus,
As long as you chose the option to show the sequence alignment (and it sounds like you did), since there are only two sequences, you can select all the positions that don’t have identical residues with command:

select :/mavPercentConserved<100

Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Aug 22, 2016, at 3:18 PM, Markus Heller <mheller at cdrd.ca> wrote:
> Hi all,
> I used matchmaker to align two homologues proteins, and to calculate the sequence alignment.  How can I select all non-conserved residues, in one fell swoop?
> Thanks and Cheers
> Markus

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