[Chimera-users] Add Hydrogens - non standard residue - protonation state

Subha Kalyaanamoorthy kalyaana at ualberta.ca
Fri Aug 19 14:05:29 PDT 2016

Oops! Sorry, I thought I am replying to the User list.

Thanks for the reply.

Best Regards,

On Fri, Aug 19, 2016 at 3:03 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Subha,
> This is out of my area, since I don’t know python.  (We always recommend
> sending questions to the chimera-users list, CC’d here, since you are more
> likely to get a good answer by asking multiple people!)
> I can only say that as far as I know if it works in the command line, then
> you should be able to use python to run the same command, as described in
> this page in the Chimera programmer’s guide:
> <http://www.rbvi.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html>
> Best,
> Elaine
> On Aug 19, 2016, at 1:57 PM, Subha Kalyaanamoorthy <kalyaana at ualberta.ca>
> wrote:
> > Hi Elaine,
> >
> > Just another question,
> >
> > Is there anything I need to import for using setattr in a python script.
> I get an error when I use it as a part of script. But, it works fine when I
> type it on the command-line of Chimera gui. Not sure what I am missing.
> >
> > Thanks and Best Regards,
> > Subha
> >

Dr. Subha Kalyaanamoorthy
Post Doctoral Fellow
Faculty of Pharmacy and Pharmaceutical Sciences
University of Alberta
Edmonton, Canada.
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