[Chimera-users] Add Hydrogens - non standard residue - protonation state

Elaine Meng meng at cgl.ucsf.edu
Fri Aug 19 14:03:30 PDT 2016


Hi Subha,
This is out of my area, since I don’t know python.  (We always recommend sending questions to the chimera-users list, CC’d here, since you are more likely to get a good answer by asking multiple people!)

I can only say that as far as I know if it works in the command line, then you should be able to use python to run the same command, as described in this page in the Chimera programmer’s guide:
<http://www.rbvi.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html>

Best,
Elaine

On Aug 19, 2016, at 1:57 PM, Subha Kalyaanamoorthy <kalyaana at ualberta.ca> wrote:

> Hi Elaine,
> 
> Just another question,
> 
> Is there anything I need to import for using setattr in a python script. I get an error when I use it as a part of script. But, it works fine when I type it on the command-line of Chimera gui. Not sure what I am missing.
> 
> Thanks and Best Regards,
> Subha
> 




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