[Chimera-users] Joining models

Jie, Jing jiej at oregonstate.edu
Sat Aug 13 10:42:51 PDT 2016

Hi Elaine,

I tried both selections but the side with the selected N atom (N side)
moves in either one. The N side has a ligand bound to it. Is there a way to
treat the N side and its ligand as a single object so that even it moves
the ligand moves with it? Thank you.


On Sat, Aug 13, 2016 at 8:48 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Jing,
> Just choose the other option, move on N side.
> We need to change the wording in the dialog to make it more clear.  By “C
> side” we really meant the side with the selected C atom, even though that
> becomes the N side of the final joined protein.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Aug 12, 2016, at 6:15 PM, Jie, Jing <jiej at oregonstate.edu> wrote:
> > Hi all,
> > Is there a way in chimera to fix the position of one model when creating
> a peptide bond between two models? I selected 'move atoms on C side' but
> the N side chain still moves. Thanks in advance!
> > Jing
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