[Chimera-users] need help to plot electrostatic surface charge distribution
meng at cgl.ucsf.edu
Tue Apr 26 08:45:48 PDT 2016
If the NMR structure has multiple conformations, you first have to decide which one you want and close the others. About that, see this post from yesterday:
Next, delete hydrogens, for example, command: delete H
You could also do it with the menu. To start learning Chimera, you could try the “getting started” tutorials:
Next, show electrostatic potential coloring on the surface. There is already a step-by-step tutorial for that, and it includes two different ways (Coulombic and Poisson-Boltzmann):
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
> On Apr 26, 2016, at 5:13 AM, ashok rout <ashok9869 at gmail.com> wrote:
> I have NMR structure of a protein. I want to plot electrostatic surface charge distribution. Can you please write me step by step commands how I can do it.
> I want to remove hydrogens first and then want to plot electrostatic surface charge distribution.
> thanks & regards,
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