[Chimera-users] Hidden water molecules

Gae, David Hyon DavidHyon.Gae at ucsf.edu
Wed Apr 6 08:23:08 PDT 2016


Hi Mike, 

If you haven’t messed around the PDB file in WordPad. i think doing “ disp: hoh “ in command line should show the water. 


Hope this help,
Dave 
> On Apr 6, 2016, at 7:38 AM, Michael Sharkey <michael.sharkey at ucd.ie> wrote:
> 
> Hi 
> 
> I'm trying to visualise water molecules associated with the crystal structure of an enzyme (specifically PDB ID: 1C1D).  They're listed when I open the pdb as a text file using WordPad, but I can't for the life of me get them to appear on the screen when I try to visualise the structure in Chimera (v. 1.10.2).
> 
> What am I missing?
> 
> Thanks in advance
> 
> Mike
> 
> -- 
> 
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