[Chimera-users] save gaussian volume filter as a new map?

Elaine Meng meng at cgl.ucsf.edu
Wed Apr 6 09:32:57 PDT 2016


Hi Adam,
You can use "File… Save map as" from the Volume Viewer dialog’s menu, or the “save” option of the “volume” command:

<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/volumeviewer.html#organization>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/volume.html#output>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 5, 2016, at 6:01 PM, H. Adam Steinberg <adam at artforscience.com> wrote:

> Hi All,
> How do I save a map that I applied a gaussian volume filter to?
> 
> I opened a cryo EMD map and then applied a gaussian volume filter to it with a width of 1.5 to clean up some of the extra detail. I would now like to save that map out of Chimera to use elsewhere.
> 
> When I save the Chimera file it says “EMD-6413.map gaussian was not saved with the session.To have them included in the session it must be saved in separate volume files before the session is saved.” How do I do that?
> 




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