[Chimera-users] Access to "Match Align" programmatically

Miguel Ortiz Lombardía miguel.ortiz-lombardia at igs.cnrs-mrs.fr
Mon Oct 26 14:16:56 PDT 2015

Hi Elaine,

Thank you for the link!
I think it will help :-)

Best regards,


El 26/10/15 a las 20:17, Elaine Meng escribió:
> Hi Miguel,
> There is no command for Match->Align, but this previous post has some information on how to call it with Python:
> <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2012-September/007934.html
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D. 
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>> On Oct 26, 2015, at 9:51 AM, Miguel Ortiz Lombardía <miguel.ortiz-lombardia at igs.cnrs-mrs.fr> wrote:
>> Hi,
>> Is it possible to call "Match Align" from a script or a 'com' file
>> without using the GUI? I would use that possibility, if it does exist,
>> to check pair-wise rmsd's of previously superimposed structures.
>> I guess people may have asked this question before, but I couldn't find
>> an answer in the usual places...
>> Cheers,
>>   Miguel

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