[Chimera-users] Failure to reproduce complete Consurf output

Eric Pettersen pett at cgl.ucsf.edu
Fri Oct 16 11:02:56 PDT 2015

Hi George,
	In the Save EPS dialog you need to change the “extent” setting from “visible region” to “entire alignment”.  Also, it is showing the histogram (at the top of the alignment).  I think you mean the dendrogram (on the left of the alignment)?  Anyway, when you save EPS in this situation it should actually produce two files, one that ends in “-alignment.eps” (that contains the alignment) and one ending in “-names.eps” (that contains the dendrogram and sequence names).  Unfortunately it is an implementation limitation that it cannot produce a combined file, though in some cases it is useful to have the “-names” file available separately.


	Eric Pettersen
	UCSF Computer Graphics Lab

> On Oct 16, 2015, at 9:14 AM, George Tzotzos <gtzotzos at me.com> wrote:
> Hi everybody,
> I’m attaching a snapshot of the output of a Consurf job (snapshot1). Trying to save the file in EPS format produces only A PART of the right-hand-side pane of the output. No histogram is produced (see output.eps).
> I’d appreciate any suggestions as to how to produce a complete output.
> Thank you in advance
> George
> <snapshot1.tiff><output.eps>
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