[Chimera-users] Morphs

Dr Kereiche skere at lf1.cuni.cz
Fri Oct 2 06:21:20 PDT 2015

Dear Elaine,

thank you for your quick reply. 
I had a bit of struggle and some points are still unclear to me but it works finally. Thus I could make the movie.

Again thank you 

have nice week end


On Sep 30, 2015, at 7:06 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Dear Sami,
> Yes, you can play a map morph and molecule morph at the same time, and you can play them both back and forth as you wish.  It requires using Chimera commands instead of the GUIs, however.  For more information please see this previous post and links therein:
> <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2013-April/008752.html>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Sep 29, 2015, at 11:54 PM, Dr Kereiche <skere at lf1.cuni.cz> wrote:
>> Dear Chimera team,
>> lately I am facing some problems for creating a movie in which I would like to combine 2 morphs with each other. 
>> To make it clearer, I  hope, 
>> I have 2 Em maps representing 2 states of my structure (vol #1 & vol #2) I did a morph maps (volume/ Morph map) after having recenter and align the 2 maps. it works perfectly.
>> I did similar procedure with 2 pdb files (1.pdb & 2.pdb), corresponding to the fitted molecular structures of the 2 states (vol#1 & vol #2) ,  using the tool/Structures comparison/ morph conformation. The pbds are aligned with the EM map using VOP command.
>> Now I would like to combine the 2 morphs together to have a final morph of the EM maps with the molecular structure, but I could not find a way to combine them. Thus I would like to know if it is possible to do it ? and if yes how to do it. 
>> Moreover is it possible to play the morph of the pdbs in way of the morph of the EM maps back and forth?
>> Thank you in advance, 
>> Sincerely 
>> Sami

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