[Chimera-users] join DNA base pairs

Elaine Meng meng at cgl.ucsf.edu
Thu Mar 12 08:48:27 PDT 2015


Dear Urszula,
Build Structure/Join Models is only for when the two parts are in two different models (if you opened those parts from two separate files, for example).

If the bases are in the same model already, you would instead use Build Structure/Adjust Bonds, or the "bond" command, as suggested in my previous reply:

<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2015-March/010766.html>

Or, if you are building starting from nothing, use Build Structure/Start Structure.  It can build helical DNA and/or RNA.

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Mar 12, 2015, at 7:47 AM, "Urszula Uciechowska" <urszula.uciechowska at biotech.ug.edu.pl> wrote:

> Dear chimera users,
> 
> Is it possible to join the DNA bases? I could not find it in manual. I
> would like to join the Guanine with Thymine. I saw in the Build
> Structure/Join Models form other bond. However is not working for me in
> this case.
> 
> best regards
> Urszula




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