[Chimera-users] How to crop a map
goddard at sonic.net
Wed Jun 24 11:30:58 PDT 2015
You can crop a map using volume dialog menu Features / Region Bounds, then save it with volume dialog File / Save Map As…. Other Chimera map capabilities are described in the Guide to Volume Data Display in Chimera:
> On Jun 23, 2015, at 7:52 PM, 李智海 wrote:
> Adding to the previous one.
> the map I want to convert has a same pixel size with the data set. So maybe the question could be that how can I cutting the boundaries of the map to fit the size of reconstruction images.
> Zhihai Li
>> On Jun 24, 2015, at 10:44 AM, 李智海 wrote:
>> Hi, Tom
>> An another question,
>> I want to make a reference map for reconstruction, here I have a map but with different map size from my raw image, how can I scale the map dimensions into a specific value without changing the centre coordinates.
>> Zhihai Li
>>> On Jun 24, 2015, at 2:00 AM, Tom Goddard wrote:
>>> If you used the Chimera Segment Map dialog (volume dialog menu Tools / Segment Map) then you select a segment (ctrl click on it) and use Segment Map menu entry Regions / Mean and SD. If you segmented the map by some other means and have the pieces as separate maps use volume dialog menu Tools / Measure Mean, SD, RMS.
>>>> On Jun 23, 2015, at 6:42 AM, 李智海 wrote:
>>>> Here I want to evaluate the flexibility of variable domains of a density map. How can I quantify the mean intensity of segmented parts by Chimera? Thanks!
>>>> Best wishes!
>>>> Zhihai Li
>>>> Ph.D student in State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics.
>>>> School of Life Sciences, Xiamen University.
>>>> Xiang'an Road(South), Xiang'an District, Xiamen City,
>>>> Fujian Province, China.
>>>> Chimera-users mailing list
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