[Chimera-users] Electrostatic Potential based on Poisson-Boltzmann using APBS

Elaine Meng meng at cgl.ucsf.edu
Sat Jul 18 12:22:38 PDT 2015


On Jul 18, 2015, at 12:08 PM, leila karami <karami.leila1 at gmail.com> wrote:

> Dear Elaine,
> Let me know those steps you exaclty did (step by step). 
> Best wishes, 
> Leila

start Chimera

you could use graphical interfaces or commands, but below are example commands

open 1zik
   (… or instead of 1zik, your protein pdb file)
pdb2pqr
   (… wait for job to finish, output will be opened automatically as model 1)
close 0
surf
apbs
  (…wait for job to finish, dx file will be opened automatically;  use Surface Color dialog)






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