[Chimera-users] SDF file

Hernando J Sosa hernando.sosa at einstein.yu.edu
Wed Jan 21 09:20:00 PST 2015

 I have an sdf file  with a small ligand molecule in 2D (it looks flat when opened in chimera). What would be the best way to  make it 3D (i.e. assign/minimize the proper bond angles & distances). Is it possible to do it in chimera?


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