[Chimera-users] radial density map

Jian Guan jug25 at psu.edu
Mon Feb 9 09:55:20 PST 2015


Hi all,

I have a mrc map of virus, T=7 icosahedron. Does anyone know how to make
radial density map (averaged radial density VS radius of virion)? 

I tried chimera method of shortcut rd. It took long time but return one
result. For the rd result, is it make along x, y or z axis? Or along
assigned axis, like 5 fold symmetric axis? I have asymmetric extra density
around 5-fold axis. What will happen in my case if use rd? 

Are there any other ways to make the plot besides of rd?

Thank you so much.

Sincerely yours,

Jian

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