[Chimera-users] How can I can calculate or know Gibbs free energy from UCSF Chimera

Awah.Chidiebere.U at mh-hannover.de Awah.Chidiebere.U at mh-hannover.de
Thu Aug 27 07:43:03 PDT 2015

Dear Colleagues,



Thanks for developing such wonderful tools as Chimera for molecular
dynamics analysis of structure.

Please I have two questions:


1.       Is it possible to calculate Gibbs free energy  from complexes
on UCSF Chimera,  for examples when  complexes are solvated?

2.       On building structures , is it possible to simulate how a given
complex could bind DNA oligos , for example  when one makes  changes in
single nucleotides and ask  a given  DNA binding TF structure to bind it
on Chimera?




I would look forward to your response to these questions. I would also
be very happy if I could speak by phone with the administrators.







Best wishes,


Chidiebere U Awah MD Msc

PhD student , Molecular Medicine

Hannover Medical School , Germany.

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20150827/a991beb2/attachment.html>

More information about the Chimera-users mailing list