[Chimera-users] How to find a specific motif from a protein structure?

Jing Tang jing.tang at helsinki.fi
Wed Aug 5 04:30:37 PDT 2015


Hi,

I would like to know how to identify a given motif such as DFG in a protein
kinase structure.  I have thought to use "select: asp,phe,gly" but it found
all the residues rather than the motif.

A related question would be then how to identify the activation loop or
other more specific domains such as p-loop p+1 loop etc. from a structure.

 

Thanks,

Jing

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