[Chimera-users] Auto dock Vina Increasing Exhaustiveness

Conrad Huang conrad at cgl.ucsf.edu
Wed Apr 29 12:29:46 PDT 2015


The Autodock Vina "exhaustiveness" parameter (at least for the web 
service) is documented to be a value between 1 and 8 (see 
http://nbcr-222.ucsd.edu/opal2/CreateSubmissionForm.do?serviceURL=http://localhost:8080/opal2/services%2Fvina_1.1.2), 
so I'm afraid there is no way to use a larger value.  Sorry.

Conrad

On 4/29/2015 9:40 AM, Tunc Morova wrote:
> Hello!
>
> I am using UCSF Chimera, Autodock Vina extension for obtaining
> conformations of my protein and ligand. In this interface, As you
> know, I can change the exhaustiveness value between 1-8. However,
> since my system is more than 30x30x30 A, I need to get my
> exhaustiveness value more than 8 for getting more accurate results.
> But I can’t make it more than 8 through Auto dock Vina interface in
> Chimera. How can I increase this exhaustiveness value ?
>
> Btw, Instead of using Opal web service, I am using vina locally.
>
> Thank you many times for your help
>
> Best Regards
>
> Tunc Morova _______________________________________________
> Chimera-users mailing list Chimera-users at cgl.ucsf.edu
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>



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