[Chimera-users] segname

Francesco Pietra chiendarret at gmail.com
Wed Apr 1 08:27:30 PDT 2015


Hi Eric:
If I did correctly, it does not work.

Attached is a pdb file from work that I recently published. If relevant, I
could also provide psf/dcd. In fact, my main interest is in describing the
MD trajectory with chimera/centroid, while highlighting in different colors
the various chains and residues of particular interest

Thanks a lot for your interest

francesco

define centroid



On Mon, Mar 30, 2015 at 11:32 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:

> Hi Francesco,
> It should be available as the atom attribute pdbSegment, *e.g.* "color
> red @/pdbSegment=XY2".  If that doesn't work, please let me know and attach
> a PDB file with segment info in it that I can use for testing.
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>
> On Mar 28, 2015, at 6:34 AM, Francesco Pietra <chiendarret at gmail.com>
> wrote:
>
> Hello:
>
> May I ask whether there is till a problem in having CHIMERA understanding
> segname? For those working with XPLOR (NAMD, for example) and multichain
> proteins, rendering results with CHIMERA becomes very tedious (having to
> use atom indexes)
>
> Thanks
> francesco pietra
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