[Chimera-users] Reg: Peptide Dimer

Elaine Meng meng at cgl.ucsf.edu
Tue Sep 30 09:53:21 PDT 2014


Hi Amit,
If you mean you want to create a dipeptide, then you can do it with Build Structure (in menu under Tools… Structure Editing).  In that tool, see the "Start Structure" section, the peptide option.  

See description here:
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/editing/editing.html#start>

After you create it, you can do other things like add hydrogens (see Adjust Torsions, AddH, Dock Prep, etc. … these tools are also in the menu under Tools… Structure Editing).  Click the Help button on each tool to see more information.

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Sep 30, 2014, at 4:16 AM, Amit Jaiswal <amitjai20 at gmail.com> wrote:

> Hi,
> 
> I would like to know if is it possible to prepare peptide dimer In Chimera. If yes, how and if no what are the possible ways to prepare it? Thanks in advance.
> 
> With kind regards,
> Amit Jaiswal




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