[Chimera-users] opening a .dx format file as a volume file?

Elaine Meng meng at cgl.ucsf.edu
Wed Sep 24 13:36:47 PDT 2014


Hi Dave,
Even though opening a .dx file will initially bring up the tool for electrostatic surface coloring, you can just dismiss that tool, open Volume Viewer (in menu under Tools… Volume Data).  In the Volume Viewer dialog, click the small oval that’s supposed to be somewhat reminiscent of an eye to display an isosurface, and proceed as you would for other types of volume data.

<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/volumeviewer.html#display>
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/framevolumeviewer.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Sep 24, 2014, at 1:25 PM, David A Case <case at biomaps.rutgers.edu> wrote:

> Hi:
> Is there a way for chimera to open a .dx file, but to treat the data as
> volume (density) data, rather than as an electrostatic potential?  That is,
> I'd like the data in the .dx file to be rendered by the Volume Viewer, as
> if I had opened a CNS/XPLOR or CCP4 map file.
> 
> Or, do you know of programs that will convert these file formats?  (I've
> written one of my own, but am looking for confirmation that my code is
> actually correct, and doesn't have some off-by-one grid point or other
> mistake.)
> 
> ....thanks!....dave case




More information about the Chimera-users mailing list