[Chimera-users] open amber trajectory error

Greg Couch gregc at cgl.ucsf.edu
Fri Sep 19 09:34:25 PDT 2014


While the traceback was not in the trajectory code, the clue is:

     OSError: [Errno 28] No space left on device

You ran out of disk space.  So if you free up some space by deleting 
some files or moving them to a different disk, you should be alright.

     HTH,

      Greg

On 9/19/2014 7:37 AM, Renato Freitas wrote:
> I am trying to open a zipped amber trajectory with chimera but I am 
> getting the following error:
>
> #################################
> Traceback (most recent call last):
>   File 
> "/home/disk0/rfreitas/softwares/chimera/share/chimera/triggerSet.py", 
> line 83, in invoke
>     self._funcData, triggerData)
>   File 
> "/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py", 
> line 329, in portOnTop
>     self.remove_webinfo(self.listen_port)
>   File 
> "/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py", 
> line 369, in remove_webinfo
>     with lock:
>   File 
> "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", 
> line 120, in __enter__
>     self.acquire()
>   File 
> "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", 
> line 32, in acquire
>     self._createFile()
>   File 
> "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", 
> line 86, in _createFile
>     os.write(self.fd, "%d\n" % os.getpid())
> OSError: [Errno 28] No space left on device
> Error processing trigger "Focus In":
> OSError: [Errno 28] No space left on device
>
>   File 
> "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", 
> line 86, in _createFile
>     os.write(self.fd, "%d\n" % os.getpid())
>
> See reply log for Python traceback.
> ################################################
>
> if I unzip the file, I can open it without problems. Since I have many 
> files to look and they are very big (> 300 MB zipped) I don't want to 
> unzip every file whenever I have to look at the trajectory.
> Any help will be appreciated.
>
> thanks,
>
> Renato
>
>
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> Chimera-users at cgl.ucsf.edu
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