[Chimera-users] [Chimera-announce] new Chimera release (v1.10)
dbanerjee at banerjee.net.in
Sat Nov 29 02:39:07 PST 2014
May be I didn't explain properly. Most UniprotKB database entries have used Modbase in the 3D structure database section. In any entry where Modbase is used, clicking on search button next to the Modbase entry used to open that structure entry page using Chimera. With the current version that doesn't seem to happen (as it was happening with the earlier versions). Please advice.
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: Wed, 26 Nov 2014 23:02:40
To: Debasish Banerjee <dbanerjee at banerjee.net.in>
Cc: Mailing List <chimera-users at cgl.ucsf.edu>
Subject: Re: [Chimera-announce] new Chimera release (v1.10)
On Nov 25, 2014, at 4:17 PM, Debasish Banerjee <dbanerjee at banerjee.net.in> wrote:
> Elaine Meng,
> I had downloaded Chimara 1.10 but it doesn't seem to operate on other sites like UniprotKB. Can you please comment.
> Debasish Banerjee
Dear Debasish Banerjee,
Not sure I understand your question. UCSF Chimera is a molecular modeling/graphics program that you use on your own computer.
The only relationship to UniProtKB is that you can fetch sequences and annotations from that site while using Chimera. Maybe you mean you had trouble fetching data from the web (Chimera menu: File… Fetch by ID)?
We haven’t heard reports of a problem. For example, I can start UCSF Chimera 1.10, use menu: File… Fetch by ID, choose database “UniProt” and then get the sequence for NGF_HUMAN shown in Chimera. Of course, you have to be connected to the internet. Otherwise, if you have some specific problem you can use Chimera menu: Help… Report a Bug and give enough information about the steps you tried so that somebody else could reproduce it.
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
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