[Chimera-users] vop threshold

Li, Zongli Zongli_Li at hms.harvard.edu
Thu May 8 09:40:05 PDT 2014


Hi Elaine,

Thanks a lot!

Best regards,

Zongli
________________________________________
From: Elaine Meng [meng at cgl.ucsf.edu]
Sent: Thursday, May 08, 2014 12:37 PM
To: Li, Zongli
Cc: Chimera BB
Subject: Re: vop threshold

Hi Zongli,
It is saying that the command option is not available in the version of Chimera that you are using, apparently a 1.7 candidate.  From looking at the release notes (Command Changes section), I see that "vop threshold" was added in Chimera 1.8.  So you need to get Chimera 1.8 or newer!

<http://www.rbvi.ucsf.edu/chimera/docs/relnotes/1.8.html>
<http://www.rbvi.ucsf.edu/chimera/download.html>

If you want the documentation to match what you have downloaded, use the Chimera Help menu.  If you are looking at documentation online, it might not match what you have.
Best,
Elaine
----------
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On May 8, 2014, at 9:26 AM, "Li, Zongli" <Zongli_Li at hms.harvard.edu> wrote:

> Hi Elaine,
> I try to set values below certain level to 0 in a EM density map (mrc format) using vop threshold:
>
> vop threshold #0 min 0.00007 set 0
>
> But I got an error message:
>
> Unknown vop operation: threshold
>
> The Chimera version: candidate version 1.7 (build 38162) 2013-01-25 00:38:47 UTC
>
> Could you please help me out?
> Thank you very much!
> Zongli




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