[Chimera-users] Chimera surface error

Elaine Meng meng at cgl.ucsf.edu
Fri Mar 28 10:03:28 PDT 2014


On Mar 28, 2014, at 4:27 AM, Uzma Saqib wrote:

> Hi Elaine,
> Chimera  is not showing me the surface of my protein file and gives the attached eror.
> i tried what it suggested, but no improvement.
> plz help.
> attashed , is the pdb.

This is a common problem in Chimera.  Some explanation and all of our ideas for possible solutions are in this page (no use for me just to repeat that information here):

<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/surfprobs.html>

#3 and #4 in that page will always work because they use different methods instead of the standard molecular surface calculation.

Sorry for the inconvenience,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

P.S. better to send chimera questions to chimera-users at cgl.ucsf.edu, unless including private data




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