[Chimera-users] Binding pocket surface command script not working

Markus Heller mheller at cdrd.ca
Thu Mar 27 13:05:28 PDT 2014


Hello,

I'm trying to reproduce the Binding Pocket Surface image from the Gallery with a different pdb file.

I can successfully reproduce with the pdb used in the example (2zcp), but not with 2v5z.  Running latest Chimera.

Steps to reproduce:

open 2v5z
delete :.b
split atoms :sag
surface
measure contactArea #0.2 #0.1 3 slab -.1,0 color tan

gives an error:

error: Array must be 2-dimensional, got 1-dimensional


  File "C:\Program Files\Chimera 1.8.1\share\MeasureVolume\__init__.py", line 60, in surface_area
    area = surface_area(varray, tarray)

See reply log for Python traceback.

Why, and would it be helpful to file a bug report?

Thanks and Cheers
Markus

--
Markus Heller, Ph.D.
NMR Scientist
CDRD - The Centre for Drug Research and Development
2405 Wesbrook Mall, Fourth Floor | Vancouver, BC  V6T 1Z3 | Main: (604) 827-1147
Direct: (604) 827-1122 | F: (604) 827-1299 | E: mheller at cdrd.ca<mailto:mheller at cdrd.ca> | www.cdrd.ca
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