[Chimera-users] Chimera Sequence alignment window

Eric Pettersen pett at cgl.ucsf.edu
Thu Mar 20 10:43:35 PDT 2014


Hi Meginir,
	For even fancier markup you may want to use ESPript (http://espript.ibcp.fr/ESPript/ESPript/).  I intend to implement such markups directly in Chimera's alignment window, but have only implemented a fraction of them so far.

--Eric

                        Eric Pettersen
                        UCSF Computer Graphics Lab
                        http://www.cgl.ucsf.edu

On Mar 20, 2014, at 10:04 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Meginir,
> if you want the image to look like the sequence window contents, you can use "File… Save EPS" from the sequence window menu or the standard screenshot app on your computer to save an image file, and then print from any image-displaying app on your computer (for example, Preview on a Mac, or Adobe Photoshop or Illustrator).
> 
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/framemav.html>
> < http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/multalignviewer.html#mavmenu-file>
> 
> If you just want the text of the alignment rather than the same appearance as the window, just use "File… Save As" in the sequence window menu to save any of the other sequence alignment formats.  They are plain text and can be shown by and printed from any standard text-editor program on your computer (for example, TextEdit on a Mac).
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D. 
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
> On Mar 20, 2014, at 2:25 AM, meginir urestal <meginir.urestal at gmail.com> wrote:
> 
>> Hi,
>> 
>> I was wondering if there was a way of printing the contents of the chimera alignment window. If not, could anyone suggest something for printing saved aligned fasta sequences.
>> 
>> Thanks
> 
> 
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