[Chimera-users] Generating surface for docking models

Elaine Meng meng at cgl.ucsf.edu
Fri Aug 22 11:04:50 PDT 2014


Dear Fei,
Is there a problem using the regular molecular surface (e.g. menu: Actions… Surface… show)?
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/representation.html#surfaces>

If there is a problem, there are some additional ideas here (especially #3, “molmap” command):
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/surfprobs.html>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/molmap.html>

I hope this helps.  If I didn’t answer the question, please send more information about what you were trying to do.
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Aug 22, 2014, at 10:53 AM, fei.wu at chem.utah.edu wrote:

> Dear Chimera team,
> 
> Is there a way of generating the surface for docking models from ClusPro
> so I can map electrostatic potential or coulombic potential on it? Since
> my docking models are composed of three enzymes (2 dimers and 1 monomer),
> I tried surfacing in "Multiscale Models"but it gave me a very low
> resolution surface.
> 
> Thank you!
> Fei




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