[Chimera-users] read file by python script and color pdb file with script
s.sariya_work at ymail.com
Mon Apr 21 20:38:48 PDT 2014
Hello Chimera team,
I am having 2 coordinates in check file. I want to take/read them and paint my pdb file loaded in chimera.
I have chimera in my ~/bin/
System specs: ubuntu 64 bit, 13.10, 4gb ram
Below is the command I have used for script-chimera communication
$ chimera64-1.8.1 --script "y.py check" -- Q6UXT6.pdb
I am storing values in listu and want to use them for coloring my file loaded.
rc("color blue :"+listu+"-"+listu)
This works well, if hard coded
("color red :55-86")
I do not get any error. The particular protein length is not colored.
attached 3 files.
Kindly suggest, how do I proceed.
PS: I had sent the same mail to chimera-dev at cgl.ucsf.edu <chimera-dev at cgl.ucsf.edu>; Sorry, I didn't find this mailing list before.
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