[Chimera-users] Editing Question

Elaine Meng meng at cgl.ucsf.edu
Mon Sep 30 09:32:53 PDT 2013


Hi Kirk,
Looking at the information for 3ALQ at the RCSB:
<http://www.rcsb.org/pdb/explore/explore.do?structureId=3alq>

…I see that chains A-F are TNF and chains R-W are TNFR.  

There are multiple ways to skin a cat, but for example, you could delete all the TNF chains with command:

delete :.a-f

General documentation on command-line specification in Chimera:
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/frameatom_spec.html>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Sep 27, 2013, at 3:59 PM, Kirk Moldoff <kmoldoff at verizon.net> wrote:

> Hi,
> I'm working with a pdb model 3ALQ. It is a Tumor Necrosis Factor and its TNFR receptor. I'd like to be able to turn off the bound TNF. Or select it for deletion. Can't figure how to do this.
> 
> Any suggestions? Ultimately I'd like to be able to save just the TNFR as a .pdb file.
> 
> Thanks,
> 
> Kirk
> --------
> Kirk Moldoff
> www.galeriekirk.com
> 609-252-9479




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