[Chimera-users] hydrophopic interaction
zen.lu at roslin.ed.ac.uk
Wed Oct 23 10:54:36 PDT 2013
I have a amphipathic helix/membrane complex assembled with CHARMN-GUI and I'll like to show those residues that come into contact with the lipid bilayer. Using find clash/contact function, I can see many lines joining the atoms of both the residues and lipid bilayer. However, I don't really know how to pick the true hydrophopic interaction from the rest of the clashes/contacts. In addition, is there a way to quatify which these interactions may be tighter than the other.
Any suggestion is appreciated.
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