[Chimera-users] Constrainted fitting

Christoph Wigge wigge.christoph at gmail.com
Tue Oct 22 04:37:04 PDT 2013


Dear all,

I would like to fit two protein monomers that form a dimer into an em density map. I know from previous mutagenesis studies that the binding takes place with two tryptophan residues and the counterpart binding pocket. How can I set this interaction as fixed so that chimera fits the rest of the molecule according to the density map without continuously changing this part of the essential protein protein interaction? I would like to fit that interaction manually and then exclude it from the automatic procedure. Thank you very much in advance.

Bests 

Christoph Wigge


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