[Chimera-users] Set interatomic distances

Elaine Meng meng at cgl.ucsf.edu
Mon Nov 18 11:56:40 PST 2013


Hi George,
Sorry, there is nothing like that.  You would have to use some other program for satisfaction of multiple constraints/restraints.

With Chimera, it would probably be difficult depending on the number of constraints, but you could measure the various distances and then move one structure relative to the other; the distance values will update automatically.
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/mouse.html#activedef>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Nov 18, 2013, at 9:16 AM, "George Patargias" <gpat at bioacademy.gr> wrote:

> Hello
> Do you know if there is a way to set interatomic distances to a certain
> value in chimera (rather than measuring them)?
> 
> Basically what I want to do is rotate/translate a peptide with respect to
> a protein so that a set of interatomic distances between the two are
> satisfied
> Many thanks!
> George
> 



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