[Chimera-users] castP, Chimera and atom numbers

Boaz Shaanan bshaanan at exchange.bgu.ac.il
Sun May 26 08:38:14 PDT 2013


Hi,

Apparently Chimera insists on consecutive serial atom numbers (the first column after ATOM in the pdb file) when it reads in castp files. If that's not the case (as most often happens when hydrogens are attached during the refinement run but are not written out to the final pdb) Chimera complains about incompatibility between the mouth file and coordinates and refuses to read in the castp files. This is my first encounter with a program that cares about the atom number column but I learnt it the hard way.

 Cheers,

             Boaz

Boaz Shaanan, Ph.D.                                        
Dept. of Life Sciences                                      
Ben-Gurion University of the Negev                          
Beer-Sheva 84105                                            
Israel                                                      
                                                            

E-mail: bshaanan at bgu.ac.il
Phone: 972-8-647-2220  Skype: boaz.shaanan                  
Fax:   972-8-647-2992 or 972-8-646-1710    

 

 

                











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