[Chimera-users] Structure minimization

Elaine Meng meng at cgl.ucsf.edu
Mon Jan 14 09:52:05 PST 2013


Hi Bobo,
As far as I know, yes.  Just try.  8-)

Nonstandard residues will be parametrized automatically as described here:
<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/minimize/minimize.html#parameters>

Best,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jan 14, 2013, at 9:46 AM, Bobo Dang wrote:

> Hey All,
> I am trying to use Chimera to minimize a small protein with a special structure, the model has nonstandard amino acid, 
> Also the N-terminal is connected to cyclized to one Asp side chain, is it possible to minimize this modified structure by 
> Chimera?
> Thanks
> bobo




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