[Chimera-users] heptamer

Elaine Meng meng at cgl.ucsf.edu
Mon Jan 14 09:19:38 PST 2013


Hi Hossein,
Yes, but the hard part may be figuring out and providing the symmetry information to Chimera.  You can create multimers from monomer PDB files using the "sym" command, but only if the symmetry information is given, either by you manually in the command with the "group" option, or already present in the header of the PDB file.

For more details, see the "sym" documentation:
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/sym.html>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jan 14, 2013, at 4:58 AM, Hossein Lanjanian wrote:

> Hi
> every body.
> I want to make a heptamer of beta cyclodextrin from its monomer pdb file. is it possible to do it with the chimera software?
> in other words, can chimera model heptamer, from, monomer?
> -- 
> With The Best
> H.Lanjanian




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